S.M. Minhaz Ud-Dean

Research Topic

2011 M.S. Photonics,Friedrich Schiller University of Jena

2010 M.S. (Ir.) Applied Physics, Delft University of Technology

2009 B.S. (Hon.) Biotechnology, University of Dhaka

Laser Induced Dynamics of a Model for Enzyme Inhibitors with Multiple Photoswitchable Groups. Institute of Physical Chemistry, University of Jena, 2011. Supervisor: Prof. Leticia Gonzalez and Dr. Philipp Marquetand.
Inﬂuence of shaped dump laser pulses with third-order chirp on a simple model system. Institute of Physical Chemistry, University of Jena, 2011. Supervisor: Prof. Leticia Gonzalez and Dr. Philipp Marquetand.
Depth of Interaction in Columnar Scintillation Material. Optics Research Group, Delft University of Technology, 2010. Supervisor: Prof. H.P. Urbach.

S. M. Minhaz Ud-Dean and R. Gunawan, Design of Experiments for Causal Inference of Gene Regulatory Networks, In the 3^rd Ascona Workshop on Statistical Learning of Biological Systems from Perturbations, Monte Verità, Ascona, Switzerland, 31 May-5 June 2015. (poster)
S. M. Minhaz Ud-Dean and R. Gunawan, Ensemble Inference and Inferability of Gene Regulatory Networks, In RECOMB/ISCB Conference on Regulatory and Systems Genomics, with DREAM Challenges, Toronto, 8-12 November 2013. (oral presentation)
S. M. Minhaz Ud-Dean and R. Gunawan, Gene Regulatory Network Inference through Transitive Reduction and Closure Estimation, In Frontiers in Systems and Synthetic Biology, Atlanta, GA, 20-24 March 2013. (oral presentation)
S. M. Minhaz Ud-dean and R. Gunawan, TRACE: Transitive Reduction and Closure Estimate of a Genetic Network, In Machine Learning in Systems Biology, Basel, Switzerland, September 2012. (poster)
S. M. Minhaz Ud-dean and R. Gunawan, TRACE: Transitive Reduction and Closure Estimate of a Genetic Network, In European Conference on Computational Biology, Basel, Switzerland, September 2012. (poster)

Ud-Dean, SMM., Heise, S., Klamt, S. and Gunawan, R. TRaCE+: Ensemble inference of gene regulatory networks from transcriptional expression profiles of gene knock-out experiments. BMC Bioinformatics 17, 252 (2016). external pageabstract
Ud-Dean, SMM., and Gunawan, R. Optimal design of gene knock-out experiments for gene regulatory network inference. Bioinformatics (2015). external pageabstract
Ud-Dean, SMM., and Gunawan, R. Ensemble Inference and Inferability of Gene Regulatory Networks. PLoS ONE, 9(8), e103812 (2014). external pageabstract
Minhaz Ud-Dean, S. M. Kinetics of Optical control of enzymatic reactions by photoswitchable inhibitors. Interdiscip Sci 3 (2), 79-90 (2011). external pageabstract
Minhaz Ud-Dean, S. M. Structural explanation for the eﬀect of humidity on persistence of airborne virus: Seasonality of inﬂuenza. Journal of Theoretical Biology 264, 822-829 (2010). external pageabstract