Tools

DeltaNet

DeltaNet is a network analysis tool for predicting genetic perturbations from gene expression data.

REDEMPTION

REDEMPTION is a MATLAB toolbox for the identification of parameters and parameter ensembles of ODE models from time-series data.

REDUCE

REDUCE is an algorithm for optimal design of gene knock-outs for gene regulatory network inference.

SINCERITIES

SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression profiles.

TRaCE

TRaCE is an algorithm for ensemble inference of gene regulatory network.

SALMON

SALMON (Systems Analysis and Learning for inferring Modifiers of Networks) is a network-based analytical tool for identifying protein targets of compounds from gene transcriptional profiles.