REDUCE - REDuction of UnCertain Edges
REDUCE is an algorithm for optimal design of gene knock-out (KO) for the purpose of gene regulatory network (GRN) inference. Please refer to our manuscript entitled "Optimal design of gene knock-out experiments for gene regulatory network inference" for more details regarding the algorithm. The archive zip file provides MATLAB scripts for REDUCE.
Prerequisites: MATLAB 2014b (also tested on Octave 3.2.4), Python 2.7
Date of last modification: 08.10.2015
Redistribution and use in source and binary forms, with or without modification, are permitted provided agreeing to the Simplified BSD Style License.
Read about Simplified BSD Style License at http://www.opensource.org/licenses/bsd-license.php
Download & Installation
Please use the following reference when using REDUCE
- Ud-Dean, SMM., and Gunawan, R. Optimal design of gene knock-out experiments for gene regulatory network inference. Bioinformatics 32 (6): 875-883 (2016). abstract
This work is supported by funding from Swiss National Science Foundation.